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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17536652_17540807_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17536652 - 17540807
Intron Length:
4156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTAC
5'SS Class:
major
3'SS Sequence:
TATTTTGCTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTTATT
Flanking Amino Acid:
GKCTRQRGPKPLYSMPESAQ
Intron Amino Acid Position:
529

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
73
32.2
Major BPS
100
1.24
0.5
100
0
Major PPT
79.6
0.67
0.9
78.2
36
Minor 5ss
46.6
-0.3
2.5
61.2
43.7
Minor BPS
67.6
0.63
1.9
89.45
34.7

Associated Gene:

Gene:
TTLL7
Ensembl Gene ID:
ENSAPLG00000016057
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016777
17506359 - 17558296
51938
ENSAPLT00000041457
17506065 - 17557213
51149
ENSAPLT00000031738
17506065 - 17560294
54230
ENSAPLT00000027266
17506065 - 17560404
54340