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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17542257_17545701_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17542257 - 17545701
Intron Length:
3445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
TTCATATCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TATTTCATATCT
Flanking Amino Acid:
SSLGTMNSSGNESLLQQKTK
Intron Amino Acid Position:
684

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71
37.5
Major BPS
100
1.24
0.5
100
0
Major PPT
76.7
0.6
0.8
74.5
35.2
Minor 5ss
33.7
-1.9
2.8
31.9
42.5
Minor BPS
60
0.39
1.9
81.95
39.2

Associated Gene:

Gene:
TTLL7
Ensembl Gene ID:
ENSAPLG00000016057
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041457
17506065 - 17557213
51149
ENSAPLT00000031738
17506065 - 17560294
54230
ENSAPLT00000027266
17506065 - 17560404
54340
ENSAPLT00000016777
17506359 - 17558296
51938