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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17545837_17547582_F

Intron Information:

Intron Rank:
17
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
17545837 - 17547582
Intron Length:
1746

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
GAAATGACTACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATCT
Flanking Amino Acid:
DEESELIIEDIMDNWKHHKT
Intron Amino Acid Position:
729

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
87.3
27
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
57.7
0.17
1.1
47.5
44.3
Minor 5ss
42.7
-0.8
2.8
59.4
38.1
Minor BPS
74.5
0.85
1.5
91.05
32.7

Associated Gene:

Gene:
TTLL7
Ensembl Gene ID:
ENSAPLG00000016057
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031738
17506065 - 17560294
54230
ENSAPLT00000027266
17506065 - 17560404
54340
ENSAPLT00000016777
17506359 - 17558296
51938
ENSAPLT00000041457
17506065 - 17557213
51149