About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17547664_17552756_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17547664 - 17552756
Intron Length:
5093

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TACTCTTTCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTGAT
U12 Branch Point Sequence:
TTTGCTTTGACT
Flanking Amino Acid:
VKLDSVKQRKLLDIVKTSVR
Intron Amino Acid Position:
756

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.2
26.3
Major BPS
75
0.62
1
65.3
41.5
Major PPT
77.7
0.62
0.8
76.9
31.4
Minor 5ss
36.1
-1.6
3.3
49.4
41.3
Minor BPS
77.6
0.95
1.3
90.81
33.2

Associated Gene:

Gene:
TTLL7
Ensembl Gene ID:
ENSAPLG00000016057
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031738
17506065 - 17560294
54230
ENSAPLT00000027266
17506065 - 17560404
54340
ENSAPLT00000016777
17506359 - 17558296
51938
ENSAPLT00000041457
17506065 - 17557213
51149