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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17552918_17556675_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17552918 - 17556675
Intron Length:
3758

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCCCA
5'SS Class:
major
3'SS Sequence:
GTTTCCATAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
GTTTCCATAACA
Flanking Amino Acid:
QGLWNCFCNSGSSWETIFSK
Intron Amino Acid Position:
809

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
62.5
43.9
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
72.6
0.51
1
67.1
37.9
Minor 5ss
37.7
-1.4
3
40.8
45
Minor BPS
76.7
0.83
1.5
85.7
32.8

Associated Gene:

Gene:
TTLL7
Ensembl Gene ID:
ENSAPLG00000016057
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016777
17506359 - 17558296
51938
ENSAPLT00000041457
17506065 - 17557213
51149
ENSAPLT00000031738
17506065 - 17560294
54230
ENSAPLT00000027266
17506065 - 17560404
54340