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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1761593_1762292_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1761593 - 1762292
Intron Length:
700

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCAGGAA
5'SS Class:
major
3'SS Sequence:
TTTTGTCACTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGACATTTAATA
Flanking Amino Acid:
LLQGDRSNIKEYLILQKTSK
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.6
0.39
1.1
58.8
35.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
75.1
0.57
0.9
74.6
35.4
Minor 5ss
21.4
-3.3
3.4
28.1
44
Minor BPS
56.9
0.21
1.5
63.68
36.2

Associated Gene:

Gene:
RWDD3
Ensembl Gene ID:
ENSAPLG00000011469
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011946
1755855 - 1762645
6791