Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17620110_17637031_F

Intron Information:

Intron Rank:

141338

Intron Class:

major

Intron Phase:

Intron Coordinates:

17620110 - 17637031

Intron Length:

16922

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGGTTT

5'SS Class:

strong_major

3'SS Sequence:

TCACTGTTCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGATAAT

U12 Branch Point Sequence:

TCACTGTTCACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.9

1.01

0.8

88.6

27.1

Major BPS

63.8

0.34

1.2

64.1

39.8

Major PPT

73.8

0.54

0.9

67.6

37.6

Minor 5ss

42.7

-0.8

3.4

64.1

47.4

Minor BPS

44.2

-0.4

2.3

56.69

42.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026109

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030597

17619897 - 17682618

62722

ENSAPLT00000017939

17562600 - 17638058

75459