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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1762409_1762506_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1762409 - 1762506
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAATTT
5'SS Class:
major
3'SS Sequence:
TTGTACAATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TATTCATGAATT
Flanking Amino Acid:
CETKVQPQHKRFQMFEVKEY
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
76.6
32.8
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
66
0.36
1
60.5
40.2
Minor 5ss
49.3
-0
2.9
73.4
43.4
Minor BPS
65.8
0.57
1.7
83.85
36.3

Associated Gene:

Gene:
RWDD3
Ensembl Gene ID:
ENSAPLG00000011469
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011946
1755855 - 1762645
6791