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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_17637155_17682327_F

Intron Information:

Intron Rank:
141340
Intron Class:
major
Intron Phase:
Intron Coordinates:
17637155 - 17682327
Intron Length:
45173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TGATTCCAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTCCAA
U12 Branch Point Sequence:
TGATGCTTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
77.5
30.7
Major BPS
59.3
0.23
1.2
70.5
35.7
Major PPT
64.7
0.33
1
59.7
40.7
Minor 5ss
39.1
-1.2
3.1
51.5
45.7
Minor BPS
61.1
0.43
1.8
76.47
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026109
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030597
17619897 - 17682618
62722