About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1806868_1806955_F

Intron Information:

Intron Rank:
127747
Intron Class:
major
Intron Phase:
Intron Coordinates:
1806868 - 1806955
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGTTCAG
5'SS Class:
major
3'SS Sequence:
TTCCTTACCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAG
U12 Branch Point Sequence:
ATTTCCTTACCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.1
57.7
42.9
Major BPS
70.6
0.51
1.5
77.9
34.9
Major PPT
65.9
0.36
1
64.6
35.5
Minor 5ss
26.8
-2.7
2.9
31.4
42.8
Minor BPS
77.6
0.85
1.5
84.86
33.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018870
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027274
1806792 - 1847280
40489
ENSAPLT00000023444
1806792 - 1843594
36803
ENSAPLT00000017899
1799161 - 1807037
7877