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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1807073_1808402_F

Intron Information:

Intron Rank:
127749
Intron Class:
major
Intron Phase:
Intron Coordinates:
1807073 - 1808402
Intron Length:
1330

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAACAGT
5'SS Class:
major
3'SS Sequence:
TCTTTGCCTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TTTTCTGCAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
71.2
40.6
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
71.5
0.48
1
71.3
33.6
Minor 5ss
35
-1.7
3.1
48.8
47
Minor BPS
57.4
0.31
2.2
83.73
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018870
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027274
1806792 - 1847280
40489
ENSAPLT00000023444
1806792 - 1843594
36803