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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1808544_1841634_F

Intron Information:

Intron Rank:
127750
Intron Class:
major
Intron Phase:
Intron Coordinates:
1808544 - 1841634
Intron Length:
33091

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
GGTTTCATTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
GTATCATAAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
89.6
24.2
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
74.3
0.55
0.9
71.1
39.6
Minor 5ss
57.8
0.27
2.3
75.5
40.6
Minor BPS
53
0.09
1.9
66.35
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018870
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023444
1806792 - 1843594
36803
ENSAPLT00000027274
1806792 - 1847280
40489