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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_18138473_18161825_F

Intron Information:

Intron Rank:
132412
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
18138473 - 18161825
Intron Length:
23353

Sequence Information:

Terminal Dinucleotides:
GT-TT
5'SS Sequence:
CTT|GTGAGAATA
5'SS Class:
major
3'SS Sequence:
ATTACATTTTCTT|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
GACTTTAGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1
71.6
33
Major BPS
73.9
0.59
1
81
30.2
Major PPT
26
-1.3
4.2
59.2
45.6
Minor 5ss
34.2
-1.8
3.1
46.4
43
Minor BPS
46.1
-0.2
1.6
59.09
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021141
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048111
18138461 - 18164091
25631