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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_18171482_18180406_F

Intron Information:

Intron Rank:
124535
Intron Class:
major
Intron Phase:
Intron Coordinates:
18171482 - 18180406
Intron Length:
8925

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAAGA
5'SS Class:
major
3'SS Sequence:
TCACATTATCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TACATTTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1.1
71.7
40.1
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
70.6
0.46
1
62
43.1
Minor 5ss
38.4
-1.3
2.9
49.8
46
Minor BPS
65.6
0.49
1.3
68.51
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017162
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038038
18167710 - 18180738
13029