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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_18218629_18221348_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18218629 - 18221348
Intron Length:
2720

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTCAC
5'SS Class:
major
3'SS Sequence:
TCTTTTGCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
AATTAAAGAACT
Flanking Amino Acid:
DINSTSTLNQGMTGNYLLTN
Intron Amino Acid Position:
1166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1.3
72.3
39.5
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
82.2
0.72
0.8
81.3
30.8
Minor 5ss
29.9
-2.3
2.7
35.6
41
Minor BPS
45.3
-0.2
2.1
68.81
40.6

Associated Gene:

Gene:
ADGRL2
Ensembl Gene ID:
ENSAPLG00000004072
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038338
18213694 - 18371429
157736
ENSAPLT00000023862
18214404 - 18371429
157026
ENSAPLT00000021561
18213694 - 18371429
157736