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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_18225801_18227673_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18225801 - 18227673
Intron Length:
1873

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TTTTCTTTTACA
Flanking Amino Acid:
KPDSSRLENIKSWVLGAFAL
Intron Amino Acid Position:
1021

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
81.6
29.9
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
95.6
1.03
0.5
91.4
20.1
Minor 5ss
37
-1.5
3.3
50.9
39.6
Minor BPS
77.6
0.86
1.5
87.29
30.4

Associated Gene:

Gene:
ADGRL2
Ensembl Gene ID:
ENSAPLG00000004072
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021561
18213694 - 18371429
157736
ENSAPLT00000004278
18214404 - 18389556
175153
ENSAPLT00000038338
18213694 - 18371429
157736
ENSAPLT00000023862
18214404 - 18371429
157026
ENSAPLT00000023178
18213694 - 18371429
157736