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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_18227766_18234937_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18227766 - 18234937
Intron Length:
7172

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTTGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCATTCTTATCT
Flanking Amino Acid:
FIGPVTFIILLNLIFLVITL
Intron Amino Acid Position:
991

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
79.9
32.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
78.7
0.64
1
75.5
38.3
Minor 5ss
36.3
-1.6
3
48
41.5
Minor BPS
67.7
0.63
1.6
80.16
41.9

Associated Gene:

Gene:
ADGRL2
Ensembl Gene ID:
ENSAPLG00000004072
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023178
18213694 - 18371429
157736
ENSAPLT00000021561
18213694 - 18371429
157736
ENSAPLT00000004278
18214404 - 18389556
175153
ENSAPLT00000038338
18213694 - 18371429
157736
ENSAPLT00000023862
18214404 - 18371429
157026