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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1823693_1826471_F

Intron Information:

Intron Rank:
130387
Intron Class:
major
Intron Phase:
Intron Coordinates:
1823693 - 1826471
Intron Length:
2779

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTCCT
5'SS Class:
major
3'SS Sequence:
CTTAACTCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CATCTCTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
69.9
40.2
Major BPS
100
1.24
0.5
100
0
Major PPT
72.8
0.51
0.9
66.4
35.2
Minor 5ss
43
-0.8
2.8
60.4
43.9
Minor BPS
74.6
0.85
1.2
82.35
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020133
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037635
1822946 - 1827070
4125