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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_18238963_18240048_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18238963 - 18240048
Intron Length:
1086

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATCTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATCC
Flanking Amino Acid:
PVHFTLEHIDPDNYFNANCS
Intron Amino Acid Position:
767

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
82.1
25.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
84.9
0.79
0.8
77.4
36.6
Minor 5ss
38.8
-1.3
3
53.7
43.8
Minor BPS
62.7
0.38
1.6
74.3
36.6

Associated Gene:

Gene:
ADGRL2
Ensembl Gene ID:
ENSAPLG00000004072
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023178
18213694 - 18371429
157736
ENSAPLT00000021561
18213694 - 18371429
157736
ENSAPLT00000004278
18214404 - 18389556
175153
ENSAPLT00000038338
18213694 - 18371429
157736
ENSAPLT00000023862
18214404 - 18371429
157026