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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_18240255_18240519_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18240255 - 18240519
Intron Length:
265

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTCGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATGAT
U12 Branch Point Sequence:
TATGGCATGATG
Flanking Amino Acid:
ASTVKQNSRNGLAKLVFIIY
Intron Amino Acid Position:
698

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
73.2
37.4
Major BPS
69.5
0.48
1.2
59.7
46.7
Major PPT
87.2
0.84
0.6
84.7
22.9
Minor 5ss
31.6
-2.1
2.9
39.6
39.8
Minor BPS
43.8
-0.6
2.1
51.92
43.1

Associated Gene:

Gene:
ADGRL2
Ensembl Gene ID:
ENSAPLG00000004072
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004278
18214404 - 18389556
175153
ENSAPLT00000038338
18213694 - 18371429
157736
ENSAPLT00000023862
18214404 - 18371429
157026
ENSAPLT00000023178
18213694 - 18371429
157736
ENSAPLT00000021561
18213694 - 18371429
157736