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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_18257919_18263590_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18257919 - 18263590
Intron Length:
5672

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
CTGTGACTGTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACATAAT
U12 Branch Point Sequence:
TCTTCTTTTACT
Flanking Amino Acid:
LEVQYECVPYIFVCPGTLKA
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
81.2
32.7
Major BPS
66.4
0.41
1.1
66.3
36.5
Major PPT
60.7
0.24
1
59
42.1
Minor 5ss
41.5
-0.9
2.8
57
41.2
Minor BPS
74.3
0.85
1.5
87.77
37.8

Associated Gene:

Gene:
ADGRL2
Ensembl Gene ID:
ENSAPLG00000004072
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004278
18214404 - 18389556
175153
ENSAPLT00000038338
18213694 - 18371429
157736
ENSAPLT00000023178
18213694 - 18371429
157736
ENSAPLT00000021561
18213694 - 18371429
157736