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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_18263701_18283573_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18263701 - 18283573
Intron Length:
19873

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAATA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCATTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTAAATTAATT
Flanking Amino Acid:
LPDAYKIMTQRCNNRTQCIV
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
83.2
28.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
83.6
0.76
0.8
77.3
29.9
Minor 5ss
36.4
-1.5
3.1
48.8
46.9
Minor BPS
62
0.46
1.8
83.39
37.1

Associated Gene:

Gene:
ADGRL2
Ensembl Gene ID:
ENSAPLG00000004072
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023862
18214404 - 18371429
157026
ENSAPLT00000023178
18213694 - 18371429
157736
ENSAPLT00000021561
18213694 - 18371429
157736
ENSAPLT00000004278
18214404 - 18389556
175153
ENSAPLT00000038338
18213694 - 18371429
157736