Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1826810_1828646_F

Intron Information:

Intron Rank:

130386

Intron Class:

major

Intron Phase:

Intron Coordinates:

1826810 - 1828646

Intron Length:

1837

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATTGCC

5'SS Class:

strong_major

3'SS Sequence:

AATTCCATTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTGAA

U12 Branch Point Sequence:

TTGTATTGAATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.8

0.82

0.9

75.1

33.1

Major BPS

79.4

0.73

0.9

69.6

37.5

Major PPT

75.9

0.58

0.9

71.5

38.4

Minor 5ss

-1.8

3.1

45.2

42.8

Minor BPS

60.2

0.4

1.6

77.61

39.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020133

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036181

1826492 - 1829143

2652