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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_18283788_18338499_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18283788 - 18338499
Intron Length:
54712

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TTATCTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATCT
Flanking Amino Acid:
LTISFLQCTEGFSRAALPFG
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
87.9
29.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
85.8
0.8
0.7
85.2
29.2
Minor 5ss
49.8
-0
2.8
73.2
43.7
Minor BPS
79.8
1.01
1.4
95.48
31.1

Associated Gene:

Gene:
ADGRL2
Ensembl Gene ID:
ENSAPLG00000004072
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004278
18214404 - 18389556
175153
ENSAPLT00000038338
18213694 - 18371429
157736
ENSAPLT00000023862
18214404 - 18371429
157026
ENSAPLT00000023178
18213694 - 18371429
157736
ENSAPLT00000021561
18213694 - 18371429
157736