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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_18338673_18389514_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
18338673 - 18389514
Intron Length:
50842

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAA
U12 Branch Point Sequence:
TTTTCTTTCAAA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
70.7
41.3
Major BPS
78.4
0.71
0.9
81.3
29.8
Major PPT
85.4
0.8
0.7
80.4
24.8
Minor 5ss
38.9
-1.2
2.8
45.8
44.3
Minor BPS
65.4
0.48
1.8
80.33
35.6

Associated Gene:

Gene:
ADGRL2
Ensembl Gene ID:
ENSAPLG00000004072
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004278
18214404 - 18389556
175153