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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1841153_1841670_R

Intron Information:

Intron Rank:
146560
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
1841153 - 1841670
Intron Length:
518

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACCGCC
5'SS Class:
major
3'SS Sequence:
CCCAACCTGCTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTTTTACCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.2
65.5
42
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
54.6
0.1
1
46.3
36.2
Minor 5ss
43.1
-0.8
3.2
60
44.7
Minor BPS
71
0.64
1.5
81.25
33.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026189
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023050
1841097 - 1842340
1244