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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1841850_1841996_R

Intron Information:

Intron Rank:
146561
Intron Class:
major
Intron Phase:
Intron Coordinates:
1841850 - 1841996
Intron Length:
147

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATACCA
5'SS Class:
major
3'SS Sequence:
CCGTGTCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATTATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
67.2
38
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
72.5
0.51
0.9
65.3
36.2
Minor 5ss
32.3
-2
3
40.9
44.8
Minor BPS
64.7
0.44
1.9
78.35
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026189
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023050
1841097 - 1842340
1244