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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_18479011_18527447_R

Intron Information:

Intron Rank:
149778
Intron Class:
major
Intron Phase:
Intron Coordinates:
18479011 - 18527447
Intron Length:
48437

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
TGCTCCTTCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAA
U12 Branch Point Sequence:
TGCTCCTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
69.5
35.6
Major BPS
73.4
0.58
0.9
75.3
29.7
Major PPT
77.7
0.62
0.8
71.7
32.8
Minor 5ss
30.3
-2.3
3.3
33.4
42
Minor BPS
69
0.59
1.8
75.93
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028138
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046777
18478864 - 18538430
59567