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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_185869_208184_R

Intron Information:

Intron Rank:
140308
Intron Class:
major
Intron Phase:
Intron Coordinates:
185869 - 208184
Intron Length:
22316

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCCAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCTTTCCAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.1
1.16
0.7
89.2
28.7
Major BPS
100
1.24
0.5
100
0
Major PPT
81
0.7
0.8
77.7
29.7
Minor 5ss
25.7
-2.8
3.6
35.8
41.1
Minor BPS
50.4
0.01
1.9
67.52
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022860
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040539
167573 - 224469
56897