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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_18633723_18634571_R

Intron Information:

Intron Rank:
145935
Intron Class:
major
Intron Phase:
Intron Coordinates:
18633723 - 18634571
Intron Length:
849

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATTTAT
5'SS Class:
major
3'SS Sequence:
GGAATTTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTTAT
U12 Branch Point Sequence:
TTATTTGGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
78.6
31
Major BPS
73.5
0.58
1.2
63.7
43.9
Major PPT
67.7
0.4
1
58.4
47
Minor 5ss
42.1
-0.9
2.9
55.1
44.4
Minor BPS
48.9
-0
2
72.73
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025923
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029132
18632037 - 18646115
14079
ENSAPLT00000026275
18632037 - 18648246
16210
ENSAPLT00000038639
18632037 - 18637652
5616
ENSAPLT00000031897
18632037 - 18649532
17496
ENSAPLT00000030284
18632037 - 18645113
13077