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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_18636018_18645793_R

Intron Information:

Intron Rank:
145940
Intron Class:
major
Intron Phase:
Intron Coordinates:
18636018 - 18645793
Intron Length:
9776

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTATT
5'SS Class:
major
3'SS Sequence:
ATTTTTCATTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTATTTTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1.1
84.7
32.4
Major BPS
100
1.24
0.5
100
0
Major PPT
84.1
0.77
0.8
82.5
33.6
Minor 5ss
44.1
-0.6
2.5
60.5
43.9
Minor BPS
54.5
0.22
1.7
71.31
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025923
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029132
18632037 - 18646115
14079