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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_18662738_18723929_F

Intron Information:

Intron Rank:
132463
Intron Class:
major
Intron Phase:
Intron Coordinates:
18662738 - 18723929
Intron Length:
61192

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTCCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCACATACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.9
1.06
0.6
93
14.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
82.9
0.74
0.6
81.6
23.5
Minor 5ss
40.7
-1
3
57.8
46.8
Minor BPS
48.7
-0
2
75.61
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021190
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043422
18662182 - 18724651
62470