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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_18818480_18818677_R

Intron Information:

Intron Rank:
144677
Intron Class:
major
Intron Phase:
Intron Coordinates:
18818480 - 18818677
Intron Length:
198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGGGA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAA
U12 Branch Point Sequence:
TGAACTTCAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
65.8
40
Major BPS
69.4
0.48
1
71.6
33.8
Major PPT
84.4
0.77
0.8
80.2
32
Minor 5ss
28.7
-2.4
3.5
34.8
43.6
Minor BPS
56.8
0.29
1.6
70.87
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025201
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037653
18818241 - 18825063
6823
ENSAPLT00000024253
18818453 - 18843296
24844