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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_18818796_18826113_R

Intron Information:

Intron Rank:
144678
Intron Class:
major
Intron Phase:
Intron Coordinates:
18818796 - 18826113
Intron Length:
7318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTCATTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGTTGTTCATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
82.1
24.6
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
83.8
0.76
0.8
80.8
36.5
Minor 5ss
27.3
-2.6
2.7
30.6
42.8
Minor BPS
46.3
-0.2
2.1
68.46
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025201
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024253
18818453 - 18843296
24844