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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_18987615_18988108_R

Intron Information:

Intron Rank:
152081
Intron Class:
major
Intron Phase:
Intron Coordinates:
18987615 - 18988108
Intron Length:
494

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTGTT
5'SS Class:
major
3'SS Sequence:
TCTGTTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
TTACTGTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
78.2
36.4
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
82.7
0.74
0.9
80.2
37.3
Minor 5ss
40.6
-1
3.4
59
45.5
Minor BPS
48.8
-0
2.3
73.82
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029407
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035287
18987295 - 18991550
4256