About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_18988215_18988978_R

Intron Information:

Intron Rank:
152082
Intron Class:
major
Intron Phase:
Intron Coordinates:
18988215 - 18988978
Intron Length:
764

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTACGTAGA
5'SS Class:
major
3'SS Sequence:
ACATTTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
AAATAAATAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65
0.35
1.2
62.1
44.2
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
83.3
0.75
0.8
80.9
35.8
Minor 5ss
36
-1.6
3
42.4
44.5
Minor BPS
43.9
-0.3
2
62.13
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029407
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035287
18987295 - 18991550
4256