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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_18989078_18991488_R

Intron Information:

Intron Rank:
152083
Intron Class:
major
Intron Phase:
Intron Coordinates:
18989078 - 18991488
Intron Length:
2411

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TACATTATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TCTACATTATTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
80.7
33.7
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
76.2
0.59
0.9
69.3
40.2
Minor 5ss
33.7
-1.9
3.3
48
47.7
Minor BPS
50.7
0.02
1.9
65.15
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029407
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035287
18987295 - 18991550
4256