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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1905958_1938871_R

Intron Information:

Intron Rank:
143563
Intron Class:
major
Intron Phase:
Intron Coordinates:
1905958 - 1938871
Intron Length:
32914

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCCTC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTCATTACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1.1
67.1
44.6
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
94
0.99
0.5
88.9
28.2
Minor 5ss
42
-0.9
3.1
51.7
45
Minor BPS
49.5
-0.1
2.1
61.72
45.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024569
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030658
1905755 - 1950685
44931