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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_19172786_19177830_R

Intron Information:

Intron Rank:
150027
Intron Class:
major
Intron Phase:
Intron Coordinates:
19172786 - 19177830
Intron Length:
5045

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACTG
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
68.8
42.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86
0.81
0.8
80.4
31.7
Minor 5ss
34.9
-1.7
3.3
47.4
48
Minor BPS
56.5
0.28
1.9
77.76
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028258
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041393
19170738 - 19177988
7251