Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_19199064_19234786_F

Intron Information:

Intron Rank:

129498

Intron Class:

major

Intron Phase:

Intron Coordinates:

19199064 - 19234786

Intron Length:

35723

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGTCAT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTTTTTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTAAT

U12 Branch Point Sequence:

AGTTTATTAATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.2

0.85

0.9

77.9

38.6

Major BPS

91.8

1.04

0.7

90.2

19.3

Major PPT

95.8

1.03

0.5

96.6

11.7

Minor 5ss

34.5

-1.8

3.3

47.2

Minor BPS

66.5

0.6

1.5

80.13

35.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019667

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021496

19198555 - 19235018

36464