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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_19295132_19424624_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19295132 - 19424624
Intron Length:
129493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCTA
5'SS Class:
strong_major
3'SS Sequence:
TATGTCTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTCTCTGTAATT
Flanking Amino Acid:
VVPSHQLALEMIMNVKMLLS
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
74.1
38.4
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
73.3
0.53
1
68.9
41.7
Minor 5ss
36
-1.6
3.2
47
48.3
Minor BPS
63.9
0.52
2
82.98
39.3

Associated Gene:

Gene:
ADGRL4
Ensembl Gene ID:
ENSAPLG00000003585
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048195
19293286 - 19461477
168192