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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_19296781_19385602_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19296781 - 19385602
Intron Length:
88822

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTGACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAA
U12 Branch Point Sequence:
TTTTCTGTGACA
Flanking Amino Acid:
MLTCFINGLCTRRHAAT
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
76.1
34.8
Major BPS
78.5
0.71
0.9
69.7
37.1
Major PPT
69.9
0.45
1
64.5
40.6
Minor 5ss
32.1
-2
2.7
37.9
40
Minor BPS
65.4
0.48
2
81.99
33.2

Associated Gene:

Gene:
ADGRL4
Ensembl Gene ID:
ENSAPLG00000003585
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003725
19296760 - 19461477
164718