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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1929740_1939267_F

Intron Information:

Intron Rank:
143122
Intron Class:
major
Intron Phase:
Intron Coordinates:
1929740 - 1939267
Intron Length:
9528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTGGA
5'SS Class:
major
3'SS Sequence:
AATTTTTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TCATCTCTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.2
64.5
41.8
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
79
0.65
0.8
73.3
36.3
Minor 5ss
27
-2.6
3.1
32.5
42.2
Minor BPS
57.6
0.32
1.8
74.83
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027108
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021787
1929101 - 1939644
10544