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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_19385664_19387224_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19385664 - 19387224
Intron Length:
1561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTGTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
TTTCAAATAAAG
Flanking Amino Acid:
ASPMKLLPFLVLVFSLLDYG
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
83.2
30.8
Major BPS
77.3
0.68
1
81.5
27
Major PPT
83.4
0.75
0.8
75.9
38
Minor 5ss
33.6
-1.9
3
41.3
45.3
Minor BPS
44.3
-0.5
2.1
58.25
42.1

Associated Gene:

Gene:
ADGRL4
Ensembl Gene ID:
ENSAPLG00000003585
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036545
19385603 - 19462856
77254
ENSAPLT00000021835
19385603 - 19462856
77254
ENSAPLT00000003725
19296760 - 19461477
164718
ENSAPLT00000046060
19293286 - 19461477
168192