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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_19387375_19424624_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19387375 - 19424624
Intron Length:
37250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAATAGA
5'SS Class:
major
3'SS Sequence:
TATGTCTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTCTCTGTAATT
Flanking Amino Acid:
YTGNGITFCYDDNECENATQ
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
71.7
39.9
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
73.3
0.53
1
68.9
41.7
Minor 5ss
34.9
-1.7
2.8
42.6
44.4
Minor BPS
63.9
0.52
2
82.98
39.3

Associated Gene:

Gene:
ADGRL4
Ensembl Gene ID:
ENSAPLG00000003585
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003725
19296760 - 19461477
164718
ENSAPLT00000046060
19293286 - 19461477
168192
ENSAPLT00000036545
19385603 - 19462856
77254
ENSAPLT00000021835
19385603 - 19462856
77254