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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_19424778_19431272_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19424778 - 19431272
Intron Length:
6495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
ACGATATTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
AATTTCTTACGA
Flanking Amino Acid:
FVPNDGTSCVDIDECSNEGT
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.9
84
30.2
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
70.1
0.45
1
62.4
42.7
Minor 5ss
41.4
-1
2.9
49.9
46.4
Minor BPS
54
0.12
1.9
66.22
40.3

Associated Gene:

Gene:
ADGRL4
Ensembl Gene ID:
ENSAPLG00000003585
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003725
19296760 - 19461477
164718
ENSAPLT00000046060
19293286 - 19461477
168192
ENSAPLT00000031433
19402813 - 19461477
58665
ENSAPLT00000025953
19387225 - 19462856
75632
ENSAPLT00000021835
19385603 - 19462856
77254