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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_19431429_19431953_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19431429 - 19431953
Intron Length:
525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACATGAT
5'SS Class:
major
3'SS Sequence:
TTTTAACTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTCTTTTTAACT
Flanking Amino Acid:
FKPSDGTSCQENPKAKCELY
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
74.9
35.2
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
84.4
0.77
0.8
77.7
35.4
Minor 5ss
32.6
-2
3.5
48.8
47.4
Minor BPS
82
1.08
1
90.89
33.1

Associated Gene:

Gene:
ADGRL4
Ensembl Gene ID:
ENSAPLG00000003585
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031433
19402813 - 19461477
58665
ENSAPLT00000025953
19387225 - 19462856
75632
ENSAPLT00000021835
19385603 - 19462856
77254
ENSAPLT00000003725
19296760 - 19461477
164718
ENSAPLT00000046060
19293286 - 19461477
168192