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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_19434021_19434109_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19434021 - 19434109
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTGGA
5'SS Class:
major
3'SS Sequence:
ATTTTATTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTACACTTAAAA
Flanking Amino Acid:
NEALRNTTITVLVNTVNNFL
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.1
61.8
38.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
87.2
0.84
0.8
81.2
34.8
Minor 5ss
29.5
-2.3
3.2
40.9
45.4
Minor BPS
62.7
0.39
1.6
72.86
37.8

Associated Gene:

Gene:
ADGRL4
Ensembl Gene ID:
ENSAPLG00000003585
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021835
19385603 - 19462856
77254
ENSAPLT00000046060
19293286 - 19461477
168192
ENSAPLT00000003725
19296760 - 19461477
164718
ENSAPLT00000036545
19385603 - 19462856
77254
ENSAPLT00000031433
19402813 - 19461477
58665
ENSAPLT00000025953
19387225 - 19462856
75632
ENSAPLT00000048195
19293286 - 19461477
168192