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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_19439552_19441094_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19439552 - 19441094
Intron Length:
1543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
AATTTTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTCTTTTAAAT
Flanking Amino Acid:
AVLMSSGGSVGVTNYNILTR
Intron Amino Acid Position:
485

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
73.6
35.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
75.7
0.58
0.9
67
39.6
Minor 5ss
37.9
-1.4
3.3
56.6
41.9
Minor BPS
67.5
0.63
1.3
80.79
34.3

Associated Gene:

Gene:
ADGRL4
Ensembl Gene ID:
ENSAPLG00000003585
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021835
19385603 - 19462856
77254
ENSAPLT00000046060
19293286 - 19461477
168192
ENSAPLT00000003725
19296760 - 19461477
164718
ENSAPLT00000036545
19385603 - 19462856
77254
ENSAPLT00000031433
19402813 - 19461477
58665
ENSAPLT00000025953
19387225 - 19462856
75632
ENSAPLT00000048195
19293286 - 19461477
168192