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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_19441299_19442828_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19441299 - 19442828
Intron Length:
1530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTATT
5'SS Class:
strong_major
3'SS Sequence:
GTTGAATTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAC
U12 Branch Point Sequence:
TCTGGTTGAATT
Flanking Amino Acid:
LIGINMNNNKLFCSITAGLL
Intron Amino Acid Position:
553

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
86.9
30.1
Major BPS
74.7
0.62
1.1
65.7
41
Major PPT
69.3
0.43
1
59.2
46
Minor 5ss
34.8
-1.7
3.2
50.1
46.4
Minor BPS
48.4
-0
1.9
67.73
44.1

Associated Gene:

Gene:
ADGRL4
Ensembl Gene ID:
ENSAPLG00000003585
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031433
19402813 - 19461477
58665
ENSAPLT00000025953
19387225 - 19462856
75632
ENSAPLT00000048195
19293286 - 19461477
168192
ENSAPLT00000021835
19385603 - 19462856
77254
ENSAPLT00000046060
19293286 - 19461477
168192
ENSAPLT00000003725
19296760 - 19461477
164718
ENSAPLT00000036545
19385603 - 19462856
77254